Commit 74780fbc authored by Roman Flury's avatar Roman Flury

rm slipped in files

parent 335fa2fc
Pipeline #2373 passed with stage
in 2 seconds
spam/.Rproj.user
spam/docs/
spam/revdep/
spam/.Renviron
spam/.Rprofile
.Rhistory
.RData
.DS_Store
......
No preview for this file type
R_LIBS=../lib
## Environmental variables to simulate R-devel CRAN errors
R_KEEP_PKG_SOURCE=yes
_R_S3_METHOD_LOOKUP_BASEENV_AFTER_GLOBALENV_=true
_R_S3_METHOD_LOOKUP_USE_TOPENV_AS_DEFENV_=true
# .Rprofile for spam-devel #
cat("--------------------------------------------------------------------------------\n")
cat("spam-devel startup\n\n")
cat(" - run a \"make dependencies\", if pkgs are not available\n")
cat(" note: the libPaths are set in .Renviron to:\n")
.libPaths()
cat("\n\n")
cat("some R options set:\n")
local({
r <- getOption("repos")
r["CRAN"] <- "https://stat.ethz.ch/CRAN/"
options(repos = r)
})
cat(" - CRAN mirror is set to: https://stat.ethz.ch/CRAN/\n")
options(scipen = 10)
cat(" - R is forced to express very small or large numbers w/o abreviation\n")
utils::rc.settings(ipck = TRUE)
cat(" - tab-complete enabled for package names in \"library()\" or \"require()\" calls.\n")
cat(" - additional environment variables are defined in .Renviron to mimick CRAN as close as possible\n")
cat("--------------------------------------------------------------------------------\n\n")
This diff is collapsed.
......@@ -10,7 +10,7 @@ citEntry(entry = "Article",
number = "10",
pages = "1--25",
url = "http://www.jstatsoft.org/v36/i10/",
doi = "10.18637/jss.v036.i10","
doi = "10.18637/jss.v036.i10",
textVersion =
paste("Reinhard Furrer, Stephan R. Sain (2010).",
"spam: A Sparse Matrix R Package with Emphasis on MCMC Methods for Gaussian Markov Random Fields.",
......
# Platform
|field |value |
|:--------|:----------------------------|
|version |R version 3.5.0 (2018-04-23) |
|os |Ubuntu 16.04.6 LTS |
|system |x86_64, linux-gnu |
|ui |X11 |
|language |en_US: |
|collate |C |
|ctype |en_US.UTF-8 |
|tz |Europe/Zurich |
|date |2019-09-06 |
# Dependencies
|package |old |new |Δ |
|:-------|:-----|:-----|:--|
|spam |2.2-2 |2.3-0 |* |
# Revdeps
## Failed to check (10)
|package |version |error |warning |note |
|:--------------|:-------|:-----|:-------|:----|
|autoFRK |? | | | |
|CARBayes |? | | | |
|CARBayesST |? | | | |
|growfunctions |0.14 |1 | | |
|latticeDensity |? | | | |
|mopa |? | | | |
|mvMORPH |? | | | |
|nat.nblast |? | | | |
|phenofit |? | | | |
|spatialreg |? | | | |
* using log directory ‘/home/b/roflur/git/spam-devel/spam/revdep/checks/CollocInfer/new/CollocInfer.Rcheck’
* using R version 3.5.0 (2018-04-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-manual --no-build-vignettes’
* checking for file ‘CollocInfer/DESCRIPTION’ ... OK
* this is package ‘CollocInfer’ version ‘1.0.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CollocInfer’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
MatlabCollocInfer 3.1Mb
R 1.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* DONE
Status: 1 NOTE
--------------------------------------------------------------------------------
spam-devel startup
- run a "make dependencies", if pkgs are not available
note: the libPaths are set in .Renviron to:
[1] "/home/b/roflur/git/spam-devel/spam/revdep/library/spam/new"
[2] "/home/b/roflur/git/spam-devel/spam/revdep/library/CollocInfer"
[3] "/usr/sepp1.5.1/drwho/pack-a/r-3.5.0-jenkins/amd64-linux-ubuntu16.04/lib/R/library"
some R options set:
- CRAN mirror is set to: https://stat.ethz.ch/CRAN/
- R is forced to express very small or large numbers w/o abreviation
- tab-complete enabled for package names in "library()" or "require()" calls.
- additional environment variables are defined in .Renviron to mimick CRAN as close as possible
--------------------------------------------------------------------------------
* installing *source* package ‘CollocInfer’ ...
** package ‘CollocInfer’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
--------------------------------------------------------------------------------
spam-devel startup
- run a "make dependencies", if pkgs are not available
note: the libPaths are set in .Renviron to:
[1] "/home/b/roflur/git/spam-devel/spam/revdep/library/spam/new"
[2] "/home/b/roflur/git/spam-devel/spam/revdep/library/CollocInfer"
[3] "/usr/sepp1.5.1/drwho/pack-a/r-3.5.0-jenkins/amd64-linux-ubuntu16.04/lib/R/library"
some R options set:
- CRAN mirror is set to: https://stat.ethz.ch/CRAN/
- R is forced to express very small or large numbers w/o abreviation
- tab-complete enabled for package names in "library()" or "require()" calls.
- additional environment variables are defined in .Renviron to mimick CRAN as close as possible
--------------------------------------------------------------------------------
* DONE (CollocInfer)
Library: /home/b/roflur/git/spam-devel/spam/revdep/library/spam/new
spam (2.3-0)
Library: /home/b/roflur/git/spam-devel/spam/revdep/library/CollocInfer
MASS (7.3-51.4)
Matrix (1.2-17)
Rcpp (1.0.2)
SparseM (1.77)
coda (0.19-3)
deSolve (1.24)
digest (0.6.20)
dotCall64 (1.0-0)
fda (2.4.8)
glue (1.3.1)
lattice (0.20-38)
magrittr (1.5)
maxLik (1.3-6)
miscTools (0.6-22)
mvtnorm (1.0-11)