spam goes pkgdown

Makefile.defs

+## General and platform dependent
+
+SHELL := /bin/bash
+
+LIBPATH = #export R_LIBS_USER=$(shell pwd)/lib:/usr/sepp1.5.1/drwho/pack-a/r-3.2.1-ro/amd64-linux-ubuntu14.04/lib/R/library:/home/furrer/R/x86_64-pc-linux-gnu-library/3.5 &&
+#R := $(LIBPATH) R
+#RSCRIPT := $(LIBPATH) Rscript
+
+#LIBPATH = export R_LIBS_USER=$(shell pwd)/lib:/usr/sepp1.5.1/drwho/pack-a/r-devel-99-ro/amd64-linux-ubuntu14.04/lib/R/library:/home/furrer/R/x86_64-pc-linux-gnu-library/3.5:/usr/lib/R-devel/lib/R/library &&
+R := $(LIBPATH) R-99                          ## On I-MATH servers: daily built devel version 
+RSCRIPT := $(LIBPATH) Rscript-99              ## On I-MATH servers: daily built devel version 
+
+.SUFFIXES: .Rnw .R .Rout .tex .pdf .c .o .so .f

spam/.Rbuildignore

+^.*\.Rproj$
+^\.Rproj\.user$
+^\_pkgdown\.yaml$
+^README\.Rmd$
+Makefile
+docs/

spam/DESCRIPTION

 Package: spam
 Type: Package
 Title: SPArse Matrix
-Version: 2.2-0
-Date: 2018-06-19
+Version: 2.2-1
+Date: 2018-08-03
 Authors@R: c(person("Reinhard", "Furrer", role = c("aut", "cre"),
                     email = "reinhard.furrer@math.uzh.ch"),
              person("Florian", "Gerber", role = c("ctb"),
@@ -43,8 +43,11 @@ Suggests:
     Matrix,
     testthat,
     R.rsp, 
-    truncdist
-VignetteBuilder: R.rsp
+    truncdist,
+    knitr,
+    rmarkdown
+VignetteBuilder: R.rsp,
+    knitr
 Description: Set of functions for sparse matrix algebra.
     Differences with other sparse matrix packages are:
     (1) we only support (essentially) one sparse matrix format,
@@ -54,3 +57,4 @@ Description: Set of functions for sparse matrix algebra.
 LazyData: true
 License: LGPL-2 | BSD_3_clause + file LICENSE
 URL: https://git.math.uzh.ch/reinhard.furrer/spam
+RoxygenNote: 6.0.1

spam/Makefile

+# Makefile to build the pkgdown website of spam
+# can be used for spam-devel and spam
+
+
+include ../Makefile.defs
+
+all: pkgdown
+
+pkgdown:
+	$(RSCRIPT) -e "pkgdown::build_site()"
+
+
+clean:
+	rm -rf docs/   
+

spam/NEWS.md

+# spam 2.2-1
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  Improved documentation for covariance functions like `cov.exp()`.
+
+BUG FIXES
+
+*  `det(spam(1))` bug fix & default of `diag.spam(x)` in `spam_diag()` removed.
+
+INTERNAL CHANGES
+
+*  spam fit for pkgdown website.
+
+
+# spam 2.2-0
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  Implementation of 'eigen.spam' and 'eigen_approx' to calculate eigenvalues and eigenvectors for sparse matrices.
+
+
+# spam 2.1-4
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  'germany.plot' has new argument 'cex.main'.
+
+BUG FIXES
+
+*  'NAOK=TRUE' did not properly dispatch in all matrix multiplications.
+*  '.newSpam()' was not always properly called, causing possible errors when creating empty 'spam' objects.
+
+INTERNAL CHANGES
+
+*  Code cleaning and coherence improvements.
+
+
+# spam 2.1-2
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  In case 64bits are required, issues an error to load package 'spam64' first.
+*  Minor fixes in help files and other documentation.
+
+INTERNAL CHANGES
+
+*  Improved registering of compiled functions.
+*  Compatibility with new versions of package 'testthat'.
+
+
+# spam 2.1-1
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  With the addon of the package spam64, we have truly 64 bits available!
+*  Dependency on dotCall64.
+*  Different option handling, we use now the classical R setting.
+    For the moment, the old functionality throws a message but in upcoming versions we use `.Deprecated`.
+    'spam.options' -> 'options', 'spam.getOption' -> 'getOption'
+*  'validate_spam' superseeds 'validspamobject'.
+*  Added the list of Fortran contributors.
+
+INTERNAL CHANGES
+
+*  Many... many. More still to come.
+*  Unit testing with testthat.
+*  Change of archaic trig functions to standard.
+    Minor edits to great circle dist.
+
+
+# spam 1.4-0
+
+INTERNAL CHANGES
+
+*  Fortran modification to address more pedantic compilations.  
+
+
+# spam 1.3-0
+
+BUG FIXES
+
+*  Adding nonsparse to sparse matrices did not always dispatch properly and caused some errors.
+    Thanks to Johan Lindström for pointing out.
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  Help improvements
+*  Added additional method dispatching for 'all.equal'.
+
+
+# spam 1.2-0 and 1.2-1
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  Renaming of demos from JSS10 paper. 
+
+*  Continuing to implement 'spam_xxx' function names: Like 'spam_rdist' there is now 'spam_diag'.
+*  'subset.rows.spam' deprecated.
+    There is an internal function 'subset_rows.spam'.
+
+INTERNAL CHANGES
+
+*  Ample minor modifications in 'DESCRIPTION' and 'NAMESPACE' for CRAN check conformity.
+*  Elimination of a few unnecessary functions (not exported).
+*  Minor modifications in tests.
+
+
+# spam 1.1-0
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  Upload of vignette linked to JSS15 paper. Related demos and tests.
+*  "DUP=FALSE" is deprecated and will be disabled in future versions of R.
+    All "DUP" arguments have been eliminated.
+    You have to expect a slightly slower version of spam.
+
+
+# spam 1.0 and 1.0-1
+
+*  This version is up to 'DESCRIPTION' and its implied changes identical to 0.90-1. With the upcoming JSS article "Pitfalls in the implementation of Bayesian hierarchical modeling of areal count data.
+    An illustration using BYM and Leroux models.
+    " a "major" version jump is adequate.
+*  Referencing to spam data through spam::...
+*  Implemented `1.1.3.1 Suggested packages` approach.
+
+
+# spam 0.70/0.80/0.90/0.90-1
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  Introduction of many as('spam','...') functions.
+*  Coercion function `as.vector` for spam objects.
+*  Wrapper functions `spam_rdist` and 'spam_rdist.earth` for smooth use in `fields`.
+*  The use of `update(A, B)` without assignment has been eliminated.
+    This is one way to address the change in memory handling changes from R 3.0.2 to R 3.1.0.
+    There is a slight overhead in memory. If this causes problems, let me know.
+*  Adjustment of the license.
+
+NEW FEATURES
+
+*  Arguments `diag` and `eps` in `nearest.dist` cause now an error.
+*  Further augmented help pages.
+
+BUG FIXES
+
+*  The demo now points to the new JSS article.
+
+INTERNAL CHANGES
+
+*  Set 'structurebased=TRUE' for the demos.
+*  Link to upcoming JSS article in one of the demos.
+*  'update.spam.chol.NgPeyton' preserves the structure (pointed out by Chris Paciorek), see above.
+*  Using similar License approach as SparseM.
+    New files `README`, `inst/0LICENSE`.
+*  File renaming (OChangeLog -> 0ChangeLog) 
+*  Adjusted error messages for precmat.RW2
+
+
+# spam 0.60-0
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  Using the flag 'structurebased', the behavior of spam is now more consistent.
+*  "Arith", "Compare", "Logic" (getGroupMembers("Ops")) have now a consistent behavior.
+
+NEW FEATURES
+
+*  Few new S3 functions for simplicity: 'var.spam', 'eigen.spam', ...
+*  New constructor functions 'colindices<-' etc.
+    Maybe additional tests may be required.
+*  Operators from 'Arith' obey now the structure based calculation. 
+
+BUG FIXES
+
+*  'inefficiencywarning' passes message correctly.
+
+INTERNAL CHANGES
+
+*  many more spam/tests/*.
+*  Consistent use of 'spam' and 'vector' siglist for 'Ops'.
+*  Minor cleaning of Fortran code.
+*  Renaming/restructuring/cleaning of files...
+*  Fortran arguments are copied when updating the cholesky structure.
+
+
+# spam 0.50-0
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  Using the flag 'structurebased=FALSE', the behavior of spam is now much, much closer to regular matrix calculations.
+    This is illustrated when calculating gamma of a sparse matrix.
+*  Along the same lines, the flag 'NAOK=TRUE' allows the use of the "not finite numbers" (NA, NaN, Inf).
+    We have tested many, many functions but full fledged use is not yet guaranteed.
+*  Currently, we can still guarantee backwards compatibility...
+
+NEW FEATURES
+
+*  New functions 'crossprod' and 'tcrossprod' as well as according method definitions.
+*  New constructor functions 'rowpointers<-' etc.
+*  Better option handling. The option 'safemode' is now 'safemodevalidity'. Additionally, new option 'NAOK'.
+*  Help pages have been improved.
+*  Operators from 'Summary' and 'Math' obey now the structure based calculation.
+    ('Math2' inherently does).
+
+BUG FIXES
+
+*  rmvnorm.[].const now work properly for any number of constraints and n.
+*  Assignment handles properly recycling.
+*  todo() now works properly.
+
+INTERNAL CHANGES
+
+*  eliminated {d,i}check by equivalent coercion.
+*  Consistent use of NAOK in Fortran calls.
+*  Minor cleaning of Fortran code.
+*  Renaming/restructuring of files...
+
+
+# spam 0.42-0
+
+NEW FEATURES
+
+*  More consistent handling of subsetting. 
+    Warning is issued if subsetting with NA
+
+BUG FIXES
+
+*  Fixed several issues when rowsubsetting...
+
+INTERNAL CHANGES
+
+*  Additional tests for positive definiteness in 'chol'.
+
+
+# spam 0.41-0
+
+NEW FEATURES
+
+*  Functions grid_trace2() received more functionality.
+
+BUG FIXES
+
+*  Eliminated bug in cov.mat().
+    Pointed out by Joshua French.
+
+INTERNAL CHANGES
+
+*  Updated DESCRIPTION: added Florian Gerber [ctb].
+*  Minor code and help cleanup. Additional testing files.
+    File header edits.
+*  Addressed Rdevel CMD check --as-cran Notes, especially workaround for DUP=FALSE.
+
+
+# spam 0.40-0
+
+BUG FIXES
+
+*  A severe bug in subsetting a spam object with a nx2 matrix crept in spam in version 0.29-3.
+    Thanks to Andrew Hong and Beat Briner for pointing out.
+*  To simplify communication, we have switched increased the tenth version number.
+*  All other changes are of cosmetic nature.
+
+
+# spam 0.30-x
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  Added several plots to visualize several MCMC chains ('grid_trace2', 'grid_zoom', ...).
+
+NEW FEATURES
+
+*  New function 'germany.plot' to draw the landkreise.
+    ('map.landkreis' is now obsolete).
+*  Switched from 'tim.colors' to 'colorRampPalette' in 'germany.plot'.
+*  Metadata in 'germany.info', polygon definitions in 'germany.poly' ('germany' kept for backwards compatibility).
+
+INTERNAL CHANGES
+
+*  Switched to mercurial for maintaining the package.
+*  Updated ChangeLog file (hg log).
+*  Increased dependency to >= R 2.15.
+*  Minor code and help cleanup.
+
+
+# spam 0.29-0, 0.29-1, 0.29-2, 0.29-3
+
+SIGNIFICANT USER-VISIBLE CHANGES
+
+*  There is a generic conflict with 'backsolve' between spam and other packages (e.g., bdsmatrix).
+    To avoid the issue, we use the standard generic implemented in 'methods' which requires an additional argument for version 0.29-0 (see  also PR#14883).
+    However to maintain backwards compatibility with packages that depend on spam, this was reverted in 0.29-1.
+    Currently, this conflict is not properly solved.
+    I propose  to load 'spam' first then the other packages, followed by manually calling:
+
+  *    setMethod("backsolve","spam.chol.NgPeyton",backsolve.spam)
+        setMethod("backsolve","spam",backsolve.spam)
+
+    Stay tuned...
+
+*  Calls like:
+ 
+  *    mat <- diag.spam(4)
+        diag(mat[-1, ]) <- 3
+        diag.spam(mat[ , -1]) <-2
+
+    now work. They are, however, somewhat inefficient.
+    'toeplitz.spam' is to be prefered.
+    Pointed out by Florian Gerber.
+
+*  The Gibbs sampler in the demo article-jss-example2 contains several bugs, pointed out by Steve Geinitz and Andrea Riebler.
+    I'll post an updated sampler in a future release.
+
+NEW FEATURES
+
+*  New functions 'rmvnorm.const', 'rmvnorm.prec.const' and 'rmvnorm.canonical.const' to draw constrained multivariate normal variates.
+*  New functions 'precmat' (wrapper to), 'precmat.RW1', 'precmat.RW2', 'precmat.season', 'precmat.IGMRFreglat' and 'precmat.IGMRFirreglat' to create precision matrices for IGMRF.
+*  New methods 'rowSums', 'colSums' and  'rowMeans', 'colMeans' for 'spam' objects.
+*  New methods 'head' and 'tail' for 'spam' and 'spam.chol.NgPeyton' objects.
+*  New method 'chol2inv' for 'spam' object.
+*  New option 'inefficiencywarning': handling of warnings issued in case of an inefficient calculation. 
+*  New option 'structurebased': should operations be performed on the nonzero entries or on including the zeros.
+    Classical example: what should the cosine of a sparse matrix look like?
+    In the near future, all operations from Math and Ops will include this option.
+    Some loss of backwards compatibility might be lost in the future.
+
+INTERNAL CHANGES
+
+*  New much faster approach to extract rows. For not too sparse large matrices improvements over two orders of magnitudes are achieved.
+*  Elininated '.Internal()' calls that induce a 'Note' on CRAN checks. This also implied a minor rewrite of 'image.spam'.    
+*  Minor code improvements. 
+*  Eliminated non-API calls (29.1).
+*  Rewritten .C("bincode",...) call as suggested by Brian Ripley (29.2).
+
+BUG FIXES
+
+*  Bug fix that occures when multiplying elementwise matrices that have non-intersecting structures (pointed out by Corentin Barbu).
+*  Bug fix in triangular backsolves involving 'spam' objects and rhs matrices.
+*  Bug fix in triangular backsolve causing errors on some architectures.
+
+
+# spam 0.28
+
+NEW FEATURES
+
+*  New function 'cleanup' (suggested by Simon Barthelme).
+*  Extending help files.
+*  Improved functionality of 'isSymmetric'.
+
+INTERNAL CHANGES
+
+*  Proper storage of data files.
+*  Cleaning up argument names within spam functions.     
+*  Cleaning up old Fortran code, i.e., eliminating unnecessary subroutines and write calls.
+
+BUG FIXES
+
+*  Bug fix that may occure when extracting zero elements (pointed out by Corentin Barbu).
+
+
+# spam 0.27
+
+NEW FEATURES
+
+*  Requires now R2.10 and higher.
+*  Functions to create Toeplitz and circulant matrices.
+*  Function to create precision matrices for gridded GMRF.
+*  Improvements in the mle.* functions.
+*  Method diff for sparse matrices (suggested by Paul Eilers).
+*  Improvement of help pages.
+*  Eliminated some help aliases to base functions (for which no 'usage' is given). 
+
+
+INTERNAL CHANGES
+
+*  Change to iL coding.
+*  Start to using 'identical'.
+*  Code cleaning due to requirement of R2.10 and higher.
+
+BUG FIXES
+
+*  Bug fix in as.spam.list (thanks to Paul Eilers).
+*  Bug fix in demo(spam) (thanks to Thomas Gsponer).
+
+
+# spam 0.24, 0.25 and 0.26
+
+*  Devel versions, not released.
+
+
+# spam 0.23
+
+NEW FEATURES
+
+*  Further improved versions of demos.
+*  Some improvements to meet Rd standards.
+    Adjustments for future R versions.
+
+
+# spam 0.22
+
+NEW FEATURES
+
+*  Improved versions of demos. Synchronized with the JSS article.
+*  Additional changes and improvements in the help files (thanks to Steve Geinitz).
+
+
+# spam 0.21
+
+NEW FEATURES
+
+*  New NEWS file, to work better with news() command.
+    The previous is available under ONEWS.
+*  New functions bandwidth, permutation, mle[.nomean][.spam], neg2loglikelihood[.spam].
+*  Renamed adiag.spam to bdiag.spam.
+*  Cleaned up argument naming with the rmvnorm.* suite.
+
+INTERNAL CHANGES
+
+*  Various Fortran code, R code and help file improvements.
+
+BUG FIXES
+
+*  Minor change in one of the demos (solves a 64bit issue).

spam/R/apply.R

@@ -5,16 +5,8 @@
 #  --> https://CRAN.R-project.org/package=spam64            #
 #  --> https://git.math.uzh.ch/reinhard.furrer/spam         #
 # by Reinhard Furrer [aut, cre], Florian Gerber [ctb],      #
-#    Daniel Gerber [ctb], Kaspar Moesinger [ctb],           #
-#    Youcef Saad [ctb] (SPARSEKIT),                         #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines),      #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines)       #
+#    Roman Flury [ctb], Daniel Gerber [ctb],                #
+#    Kaspar Moesinger [ctb]                                 #
 # HEADER END ################################################
 
 

spam/R/constructors.R

@@ -5,16 +5,8 @@
 #  --> https://CRAN.R-project.org/package=spam64            #
 #  --> https://git.math.uzh.ch/reinhard.furrer/spam         #
 # by Reinhard Furrer [aut, cre], Florian Gerber [ctb],      #
-#    Daniel Gerber [ctb], Kaspar Moesinger [ctb],           #
-#    Youcef Saad [ctb] (SPARSEKIT),                         #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines),      #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines)       #
+#    Roman Flury [ctb], Daniel Gerber [ctb],                #
+#    Kaspar Moesinger [ctb]                                 #
 # HEADER END ################################################
 
      

spam/R/covmat.R

@@ -5,16 +5,8 @@
 #  --> https://CRAN.R-project.org/package=spam64            #
 #  --> https://git.math.uzh.ch/reinhard.furrer/spam         #
 # by Reinhard Furrer [aut, cre], Florian Gerber [ctb],      #
-#    Daniel Gerber [ctb], Kaspar Moesinger [ctb],           #
-#    Youcef Saad [ctb] (SPARSEKIT),                         #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines),      #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines)       #
+#    Roman Flury [ctb], Daniel Gerber [ctb],                #
+#    Kaspar Moesinger [ctb]                                 #
 # HEADER END ################################################
 
 

spam/R/deprecated.R

@@ -5,16 +5,8 @@
 #  --> https://CRAN.R-project.org/package=spam64            #
 #  --> https://git.math.uzh.ch/reinhard.furrer/spam         #
 # by Reinhard Furrer [aut, cre], Florian Gerber [ctb],      #
-#    Daniel Gerber [ctb], Kaspar Moesinger [ctb],           #
-#    Youcef Saad [ctb] (SPARSEKIT),                         #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines),      #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines)       #
+#    Roman Flury [ctb], Daniel Gerber [ctb],                #
+#    Kaspar Moesinger [ctb]                                 #
 # HEADER END ################################################
 
 

spam/R/diff.R

@@ -5,16 +5,8 @@
 #  --> https://CRAN.R-project.org/package=spam64            #
 #  --> https://git.math.uzh.ch/reinhard.furrer/spam         #
 # by Reinhard Furrer [aut, cre], Florian Gerber [ctb],      #
-#    Daniel Gerber [ctb], Kaspar Moesinger [ctb],           #
-#    Youcef Saad [ctb] (SPARSEKIT),                         #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines),      #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines)       #
+#    Roman Flury [ctb], Daniel Gerber [ctb],                #
+#    Kaspar Moesinger [ctb]                                 #
 # HEADER END ################################################
 
      

spam/R/dim.R

@@ -5,16 +5,8 @@
 #  --> https://CRAN.R-project.org/package=spam64            #
 #  --> https://git.math.uzh.ch/reinhard.furrer/spam         #
 # by Reinhard Furrer [aut, cre], Florian Gerber [ctb],      #
-#    Daniel Gerber [ctb], Kaspar Moesinger [ctb],           #
-#    Youcef Saad [ctb] (SPARSEKIT),                         #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines),      #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines)       #
+#    Roman Flury [ctb], Daniel Gerber [ctb],                #
+#    Kaspar Moesinger [ctb]                                 #
 # HEADER END ################################################
 
 

spam/R/dist.R

@@ -5,16 +5,8 @@
 #  --> https://CRAN.R-project.org/package=spam64            #
 #  --> https://git.math.uzh.ch/reinhard.furrer/spam         #
 # by Reinhard Furrer [aut, cre], Florian Gerber [ctb],      #
-#    Daniel Gerber [ctb], Kaspar Moesinger [ctb],           #
-#    Youcef Saad [ctb] (SPARSEKIT),                         #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines),      #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines)       #
+#    Roman Flury [ctb], Daniel Gerber [ctb],                #
+#    Kaspar Moesinger [ctb]                                 #
 # HEADER END ################################################
 
 

spam/R/eigen.R

@@ -5,16 +5,8 @@
 #  --> https://CRAN.R-project.org/package=spam64            #
 #  --> https://git.math.uzh.ch/reinhard.furrer/spam         #
 # by Reinhard Furrer [aut, cre], Florian Gerber [ctb],      #
-#    Daniel Gerber [ctb], Kaspar Moesinger [ctb],           #
-#    Youcef Saad [ctb] (SPARSEKIT),                         #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines),      #
-#    Esmond G. Ng [ctb] (Fortran Cholesky routines),        #
-#    Barry W. Peyton [ctb] (Fortran Cholesky routines),     #
-#    Joseph W.H. Liu [ctb] (Fortran Cholesky routines),     #
-#    Alan D. George [ctb] (Fortran Cholesky routines)       #
+#    Roman Flury [ctb], Daniel Gerber [ctb],                #
+#    Kaspar Moesinger [ctb]                                 #
 # HEADER END ################################################