diff --git a/public/LICENSE-text.html b/public/LICENSE-text.html index 9b5261d73a73ae6ee64932f357c440fac81a239d..a87d5f441fca22bf18508e6422eb210f2a4a5b2f 100644 --- a/public/LICENSE-text.html +++ b/public/LICENSE-text.html @@ -1,6 +1,6 @@ - + @@ -9,17 +9,17 @@ License • spam - + - + - + - + - + @@ -35,7 +35,8 @@ - + + - + @@ -9,17 +9,17 @@ Articles • spam - + - + - + - + - + @@ -35,7 +35,8 @@ - + + + Illustrations and Examples • spam - - - + + + - @@ -22,14 +22,15 @@
diff --git a/public/reference/operations.html b/public/reference/operations.html index 57cc8336b35f4aa26c4c1294ebf23db6d29e22a1..efd60f7f67d8cf0b0ef7449fbbb1b09160d9982d 100644 --- a/public/reference/operations.html +++ b/public/reference/operations.html @@ -1,6 +1,6 @@ - + @@ -9,17 +9,17 @@ Basic Linear Algebra for Sparse Matrices — spam operations • spam - + - + - + - + - + @@ -39,7 +39,8 @@ of class spam." /> - + + - + @@ -9,17 +9,17 @@ Options Settings — options • spam - + - + - + - + - + @@ -40,7 +40,8 @@ - + + - + @@ -9,17 +9,17 @@ Extract the permutation — ordering • spam - + - + - + - + - + @@ -39,7 +39,8 @@ - + + - + @@ -9,17 +9,17 @@ Padding a (sparse) matrix — pad • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Permute a matrix — permutation • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Specific options Setting — powerboost • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ IGMRF Precision Matrices — precmat • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Printing and summarizing sparse matrices — print • spam - + - + - + - + - + @@ -39,7 +39,8 @@ - + + - + @@ -9,17 +9,17 @@ Wrapper for Distance Matrix Computation — fields wrapper • spam - + - + - + - + - + @@ -39,7 +39,8 @@ - + + - + @@ -9,17 +9,17 @@ Draw Constrainted Multivariate Normals — rmvnorm.const • spam - + - + - + - + - + @@ -39,7 +39,8 @@ - + + - + @@ -9,17 +9,17 @@ Draw Multivariate Normals — rmvnorm • spam - + - + - + - + - + @@ -39,7 +39,8 @@ - + + - + @@ -9,17 +9,17 @@ Form Row and Column Sums and Means — rowSums • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Wappers for Sparse Matrices — s3only • spam - + - + - + - + - + @@ -39,7 +39,8 @@ - + + - + @@ -9,17 +9,17 @@ Linear Equation Solving for Sparse Matrices — spam solve • spam - + - + - + - + - + @@ -43,7 +43,8 @@ of a matrix if the right-hand-side is missing." /> - + + - + @@ -9,17 +9,17 @@ Class "spam" — spam-class • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Deprecated Objects in Package <span class="pkg">spam</span> — spam-deprecated • spam - + - + - + - + - + @@ -40,7 +40,8 @@ - + + - + @@ -9,17 +9,17 @@ SPArse Matrix Package — . SPAM . • spam - + - + - + - + - + @@ -39,7 +39,8 @@ - + + - + @@ -9,17 +9,17 @@ Class "spam.chol.NgPeyton" — spam.chol.NgPeyton-class • spam - + - + - + - + - + @@ -39,7 +39,8 @@ method" /> - + + - + @@ -9,17 +9,17 @@ Sparse Matrix Class — spam • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Spam internal and auxiliary functions — spam internal • spam - + - + - + - + - + @@ -40,7 +40,8 @@ - + + - + @@ -9,17 +9,17 @@ Rounding of Numbers — Summary • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Small "ToDo" list — todo • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Create Toeplitz Matrices — toeplitz • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Transform a spam format to triplets — triplet • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Validate a spam objects — validate_spam • spam - + - + - + - + - + @@ -38,7 +38,8 @@ - + + - + @@ -9,17 +9,17 @@ Spam Version Information — version • spam - + - + - + - + - + @@ -42,7 +42,8 @@ spam.Version() provides detailed information about the version of spam - + + - + @@ -9,17 +9,17 @@ Combine spam Matrices by Rows or Columns — cbind • spam - + - + - + - + - + @@ -39,7 +39,8 @@ - + + https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/constructors.R b/spam/R/constructors.R index eaab5eb7ef58de40781ca84a0e63d8c73c0e0f68..f3dda699a90d3f0c51e8b1df9b3f1960296b4b43 100644 --- a/spam/R/constructors.R +++ b/spam/R/constructors.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/covmat.R b/spam/R/covmat.R index dac546b7e40d9c164c77f0c88fae05b8f99990d4..31d4fd4eff6077eba6ce546fa8fcc26ff9d6cb13 100644 --- a/spam/R/covmat.R +++ b/spam/R/covmat.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/definitions.R b/spam/R/definitions.R index 1a4d0a60e6cf1d264a915dd8a6a3c496a7943a80..56a36e907ece7d3aff499dd901e9794712c9a127 100644 --- a/spam/R/definitions.R +++ b/spam/R/definitions.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/deprecated.R b/spam/R/deprecated.R index 2b5ac7b08513bf426591fdf96c9aa176ffe46d44..5a71c9ff44b5695bd52e8d90565d262487b921e4 100644 --- a/spam/R/deprecated.R +++ b/spam/R/deprecated.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/diff.R b/spam/R/diff.R index 08980f8862b3f0ea76795451890a25251e40b583..1ee36762f8716430c972ab589a981da77d77720a 100644 --- a/spam/R/diff.R +++ b/spam/R/diff.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/dim.R b/spam/R/dim.R index 50f22721c5b4b72e52fbbdf053cb1e68cda33967..047416287586dbe7531565652ed423ab7bd79f10 100644 --- a/spam/R/dim.R +++ b/spam/R/dim.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/dist.R b/spam/R/dist.R index 91b5c3a0ec3442ef2847dbd30a2a6af3ad360802..7d7b0a588a80e7a66ce90d1e6280bad0f66a6b8f 100644 --- a/spam/R/dist.R +++ b/spam/R/dist.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/eigen.R b/spam/R/eigen.R index 0fca2d0c3146f54035ca1e2199e7a6a4c19ad62f..734ef0dec83c3dbbebc0e1544d1ea1f27c10b67c 100644 --- a/spam/R/eigen.R +++ b/spam/R/eigen.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/foreign.R b/spam/R/foreign.R index 9f19b3aa808a0cbecaabc797527c1eefd1897cdf..35a62df110f5116fe7c4c6bf392899d1127567cd 100644 --- a/spam/R/foreign.R +++ b/spam/R/foreign.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/helper.R b/spam/R/helper.R index b29e126650c9eee42ace45fb3132742020cfad69..bc7b589e2f674d059e07cf5de5091c51f7dc2353 100644 --- a/spam/R/helper.R +++ b/spam/R/helper.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/kronecker.R b/spam/R/kronecker.R index 04e443b703cd99ad10be2400a4c066f243bd92b0..7e27167f5f3e475712ac705d631bb40c95289795 100644 --- a/spam/R/kronecker.R +++ b/spam/R/kronecker.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/math.R b/spam/R/math.R index 09dd3898d4d04abc58270f0b61f343c7e30a7b71..cc3a14e15201827e451d59c54d8566f83f3ff8a9 100644 --- a/spam/R/math.R +++ b/spam/R/math.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/mle.R b/spam/R/mle.R index 685f505097a8fbd86a745d2310aa294e214d759d..bf745f28abd40f5da590e0d57f388a6da40c3789 100644 --- a/spam/R/mle.R +++ b/spam/R/mle.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/norm.R b/spam/R/norm.R index 47ee42324511724022f1bd07fc056bf8e96757d9..91e4bde9858c430d4b0323480faa0c268391ced6 100644 --- a/spam/R/norm.R +++ b/spam/R/norm.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/permutation.R b/spam/R/permutation.R index fcaa08bc7ee7800f1fa04c0e2a473b2b028ef50a..86c5e68442262007285c79c0aa50161f01026a9d 100644 --- a/spam/R/permutation.R +++ b/spam/R/permutation.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/plotting.R b/spam/R/plotting.R index 0f33c6eaf74c267f1d3db002f0b76f481e3a4fcb..ef46f9210dca56d47b309a81ded160b74cf849db 100644 --- a/spam/R/plotting.R +++ b/spam/R/plotting.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/precmat.R b/spam/R/precmat.R index fd7705db8673b45ed860e3fed9d597793ecfedbb..5c84bd1c4cf0e562ed12759b400991215a7b2a0f 100644 --- a/spam/R/precmat.R +++ b/spam/R/precmat.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/profile.R b/spam/R/profile.R index fc7b3ce7e51f89b1ebc517332fbc935df0a8fc4b..1ba19b95d8bf6c5c935bc3d0917b91f67dc9a437 100644 --- a/spam/R/profile.R +++ b/spam/R/profile.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/rep_len64.R b/spam/R/rep_len64.R index 4ba21cbdd87b5c79f6817a395a5e93650ff66815..08b58fab2b08a47b6442a3e21f47f299d6736921 100644 --- a/spam/R/rep_len64.R +++ b/spam/R/rep_len64.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/rmvnorm.R b/spam/R/rmvnorm.R index df2f0bf86a1414bcef66fbdc1dd8dc3060cfedc0..a89fe7b8a61e6be213c39e99f9acd018738bc9a1 100644 --- a/spam/R/rmvnorm.R +++ b/spam/R/rmvnorm.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/rowcolstats.R b/spam/R/rowcolstats.R index 2584eb138d05fc8d8ee5a1de2cbe20f328e13da6..5e23a805a3b6b61ffdebee2ac96245345c5d993e 100644 --- a/spam/R/rowcolstats.R +++ b/spam/R/rowcolstats.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/s3only.R b/spam/R/s3only.R index f138ce208f3aafad7916fbea1d0d372519900919..ee36f91bfd6b246debeb54b3a5c49ad3fb0150ae 100644 --- a/spam/R/s3only.R +++ b/spam/R/s3only.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/s4coerce.R b/spam/R/s4coerce.R index 53187ec9fbf967f4a7c5aa7deeb41b6ca116f9ef..f2635dcebc2266ff3ac631c38ee065b0d4c2cd87 100644 --- a/spam/R/s4coerce.R +++ b/spam/R/s4coerce.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/spam_solve.R b/spam/R/spam_solve.R index 0fc8d6b9c5e32c2da0420638d9cdd1737be699c4..a1cf19092819f5f17428721435686cb941fc6598 100644 --- a/spam/R/spam_solve.R +++ b/spam/R/spam_solve.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/spamlist.R b/spam/R/spamlist.R index 833177903809fa322b6047a331b9bd6b9b9988fd..782e4860060b248fc1924394854aeee0facbbbd6 100644 --- a/spam/R/spamlist.R +++ b/spam/R/spamlist.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/subset.R b/spam/R/subset.R index e447abcc0eca5ec9bc05186be07af7eb856cf489..e34d5beef030b1f9e725861397004626490fba34 100644 --- a/spam/R/subset.R +++ b/spam/R/subset.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/summary.R b/spam/R/summary.R index 70377efe2ec548bab46ee55dbb34244d40051c1e..7b8abea8ee2f3930ce2374d9e063ba04334ac78f 100644 --- a/spam/R/summary.R +++ b/spam/R/summary.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/tailhead.R b/spam/R/tailhead.R index 6868d83fe10c559db99f8e5d11c8d1d851cad7da..24909c35457f18e803e056ae14438768cf8f177e 100644 --- a/spam/R/tailhead.R +++ b/spam/R/tailhead.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/tcrossprod.R b/spam/R/tcrossprod.R index aeab9834804972285cd8bd5a6264844b43639a42..ef97a8999cc2b17e082e4da1ff0b6ab753f65770 100644 --- a/spam/R/tcrossprod.R +++ b/spam/R/tcrossprod.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/toepliz.R b/spam/R/toepliz.R index ca88289b23c712b9544bfe76a28a0175205bbb15..3c985748ce05a15041f32dba7d469bb410f7cd68 100644 --- a/spam/R/toepliz.R +++ b/spam/R/toepliz.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/R/xybind.R b/spam/R/xybind.R index 9dd21297b898a8bcc04528fc1560cf43c59d8841..f03977afa69e0bfb033a39b9a315502fb9e70b75 100644 --- a/spam/R/xybind.R +++ b/spam/R/xybind.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/README.Rmd b/spam/README.Rmd index c229f385ea4b4648b44394557b9496b2308ea0b9..b145c46cf95420529020de0c50529171621e37ae 100644 --- a/spam/README.Rmd +++ b/spam/README.Rmd @@ -21,6 +21,7 @@ vignette: > --- [![](https://www.r-pkg.org/badges/version-ago/spam)](https://cran.r-project.org/package=spam) [![](https://cranlogs.r-pkg.org/badges/spam)](https://cran.r-project.org/package=spam) +[![](https://cranlogs.r-pkg.org/badges/grand-total/spam)](https://cranlogs.r-pkg.org/badges/grand-total=spam) A set of functions for sparse matrix algebra. diff --git a/spam/tests/demo_article-jss-example1.R b/spam/tests/demo_article-jss-example1.R index 677b7fe9f3addfbe3750389e4457659a8a8dad56..0de9216f31e59abc6d737295bb9c33874569be4b 100644 --- a/spam/tests/demo_article-jss-example1.R +++ b/spam/tests/demo_article-jss-example1.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/demo_article-jss-example1.Rout.save b/spam/tests/demo_article-jss-example1.Rout.save index 1a2cb9861572ac4a2ed100991f950846ccc69325..4aeb6de503b9771865d02e9ac2e3358b18a903ee 100644 --- a/spam/tests/demo_article-jss-example1.Rout.save +++ b/spam/tests/demo_article-jss-example1.Rout.save @@ -1,6 +1,6 @@ -R Under development (unstable) (2018-12-19 r75867) -- "Unsuffered Consequences" -Copyright (C) 2018 The R Foundation for Statistical Computing +R Under development (unstable) (2019-03-06 r76206) -- "Unsuffered Consequences" +Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -21,8 +21,8 @@ Type 'q()' to quit R. > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # -> # by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -> # Roman Flury [ctb], Daniel Gerber [ctb], # +> # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +> # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > @@ -42,7 +42,7 @@ Type 'q()' to quit R. > library("spam") Loading required package: dotCall64 Loading required package: grid -Spam version 2.2-1 (2018-12-20) is loaded. +Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the @@ -255,4 +255,4 @@ default value for 'cex' in 'display' might not be the optimal choice > > proc.time() user system elapsed - 2.156 0.164 2.728 + 1.552 0.112 1.773 diff --git a/spam/tests/demo_article-jss-example2.R b/spam/tests/demo_article-jss-example2.R index 484b0067ede630e136de859c9c4911603a36c6ce..1619db74844ed2ea584b972ba4e53ead4dd2d992 100644 --- a/spam/tests/demo_article-jss-example2.R +++ b/spam/tests/demo_article-jss-example2.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/demo_article-jss-example2.Rout.save b/spam/tests/demo_article-jss-example2.Rout.save index 1495a51eb3a9d1a47c2c6260ae2850bd947d0660..eabad60fd35b530b3862e4a98aa51858ef22b914 100644 --- a/spam/tests/demo_article-jss-example2.Rout.save +++ b/spam/tests/demo_article-jss-example2.Rout.save @@ -1,6 +1,6 @@ -R Under development (unstable) (2018-12-19 r75867) -- "Unsuffered Consequences" -Copyright (C) 2018 The R Foundation for Statistical Computing +R Under development (unstable) (2019-03-06 r76206) -- "Unsuffered Consequences" +Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -21,8 +21,8 @@ Type 'q()' to quit R. > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # -> # by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -> # Roman Flury [ctb], Daniel Gerber [ctb], # +> # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +> # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > @@ -58,7 +58,7 @@ Loading required package: fields Loading required package: spam Loading required package: dotCall64 Loading required package: grid -Spam version 2.2-1 (2018-12-20) is loaded. +Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the @@ -284,4 +284,4 @@ See www.image.ucar.edu/~nychka/Fields for > > proc.time() user system elapsed - 1.732 0.160 2.208 + 1.488 0.180 1.985 diff --git a/spam/tests/demo_article-jss.R b/spam/tests/demo_article-jss.R index d0cd141ac5b376930a598a1d08b3cc1a0380d07e..8836da61f3464778fc040ea78afe834c7df3ab9a 100644 --- a/spam/tests/demo_article-jss.R +++ b/spam/tests/demo_article-jss.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/demo_article-jss.Rout.save b/spam/tests/demo_article-jss.Rout.save index 09e0d83d4b7695d2f5f444f9dc41f1b7ec1a10da..98119cc01828405efd10e0b6f58939a5b076d4cc 100644 --- a/spam/tests/demo_article-jss.Rout.save +++ b/spam/tests/demo_article-jss.Rout.save @@ -1,6 +1,6 @@ -R Under development (unstable) (2018-12-19 r75867) -- "Unsuffered Consequences" -Copyright (C) 2018 The R Foundation for Statistical Computing +R Under development (unstable) (2019-03-06 r76206) -- "Unsuffered Consequences" +Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -21,8 +21,8 @@ Type 'q()' to quit R. > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # -> # by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -> # Roman Flury [ctb], Daniel Gerber [ctb], # +> # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +> # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > @@ -49,7 +49,7 @@ Type 'q()' to quit R. > options( echo=FALSE) Loading required package: dotCall64 Loading required package: grid -Spam version 2.2-1 (2018-12-20) is loaded. +Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the @@ -101,4 +101,4 @@ NULL > > proc.time() user system elapsed - 7.208 0.288 8.690 + 5.692 0.188 6.240 diff --git a/spam/tests/demo_cholesky.R b/spam/tests/demo_cholesky.R index 12437f71bbfa3c5861fe710e11f06e9be9fd5924..4da6d1174432f190a4361d74ed7f101a9992028e 100644 --- a/spam/tests/demo_cholesky.R +++ b/spam/tests/demo_cholesky.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/demo_cholesky.Rout.save b/spam/tests/demo_cholesky.Rout.save index 3aa78d07297da2be3f297bb81c26fc6d8517e67f..0ea1cc3987114d941155dede3dad66fa07ca62a6 100644 --- a/spam/tests/demo_cholesky.Rout.save +++ b/spam/tests/demo_cholesky.Rout.save @@ -1,6 +1,6 @@ -R Under development (unstable) (2018-12-19 r75867) -- "Unsuffered Consequences" -Copyright (C) 2018 The R Foundation for Statistical Computing +R Under development (unstable) (2019-03-06 r76206) -- "Unsuffered Consequences" +Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -21,8 +21,8 @@ Type 'q()' to quit R. > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # -> # by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -> # Roman Flury [ctb], Daniel Gerber [ctb], # +> # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +> # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > @@ -31,7 +31,7 @@ Type 'q()' to quit R. > options( echo=FALSE) Loading required package: dotCall64 Loading required package: grid -Spam version 2.2-1 (2018-12-20) is loaded. +Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the @@ -39,4 +39,4 @@ suffix '.spam' to the function name, e.g. 'help( chol.spam)'. > > proc.time() user system elapsed - 1.100 0.076 1.392 + 0.936 0.076 1.156 diff --git a/spam/tests/demo_jss15-BYM.R b/spam/tests/demo_jss15-BYM.R index 4173e7edca72918a94da76569c379cee4bb6ff5b..72cd66b91bcf4a442e540a33379628317e7b9313 100644 --- a/spam/tests/demo_jss15-BYM.R +++ b/spam/tests/demo_jss15-BYM.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/demo_jss15-BYM.Rout.save b/spam/tests/demo_jss15-BYM.Rout.save index aee32f9a37162db87652420feeeb7a28db3ed556..c39c11fdac31f03e9f86a427ac2e9ce9ecf0ce99 100644 --- a/spam/tests/demo_jss15-BYM.Rout.save +++ b/spam/tests/demo_jss15-BYM.Rout.save @@ -1,6 +1,6 @@ -R Under development (unstable) (2018-12-19 r75867) -- "Unsuffered Consequences" -Copyright (C) 2018 The R Foundation for Statistical Computing +R Under development (unstable) (2019-03-06 r76206) -- "Unsuffered Consequences" +Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -21,8 +21,8 @@ Type 'q()' to quit R. > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # -> # by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -> # Roman Flury [ctb], Daniel Gerber [ctb], # +> # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +> # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > @@ -30,7 +30,7 @@ Type 'q()' to quit R. > options( echo=FALSE) Loading required package: dotCall64 Loading required package: grid -Spam version 2.2-1 (2018-12-20) is loaded. +Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the @@ -49,4 +49,4 @@ suffix '.spam' to the function name, e.g. 'help( chol.spam)'. > > proc.time() user system elapsed - 1.724 0.212 2.381 + 1.336 0.144 1.613 diff --git a/spam/tests/demo_jss15-Leroux.R b/spam/tests/demo_jss15-Leroux.R index bacb279c4ecbd6e96d313e711a494336948945b8..a6b0dd1fa6060eab9c210442777df01680dd04b5 100644 --- a/spam/tests/demo_jss15-Leroux.R +++ b/spam/tests/demo_jss15-Leroux.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/demo_jss15-Leroux.Rout.save b/spam/tests/demo_jss15-Leroux.Rout.save index d150d47e978026c4061732d0c2ba9714532bb5b5..b4e0bd4a66b6363f605d13131de2d0101b9af4de 100644 --- a/spam/tests/demo_jss15-Leroux.Rout.save +++ b/spam/tests/demo_jss15-Leroux.Rout.save @@ -1,6 +1,6 @@ -R Under development (unstable) (2018-12-19 r75867) -- "Unsuffered Consequences" -Copyright (C) 2018 The R Foundation for Statistical Computing +R Under development (unstable) (2019-03-06 r76206) -- "Unsuffered Consequences" +Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -21,15 +21,15 @@ Type 'q()' to quit R. > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # -> # by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -> # Roman Flury [ctb], Daniel Gerber [ctb], # +> # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +> # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > > options( echo=FALSE) Loading required package: dotCall64 Loading required package: grid -Spam version 2.2-1 (2018-12-20) is loaded. +Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the @@ -59,4 +59,4 @@ Loading required package: evd > > proc.time() user system elapsed - 2.66 0.22 3.37 + 2.264 0.240 2.839 diff --git a/spam/tests/demo_spam.R b/spam/tests/demo_spam.R index 41a78b48a4711f97db6926ce1c120736fdc8fa84..a511c78f34f08c82ff5b23dcd2ef9b7794017d8f 100644 --- a/spam/tests/demo_spam.R +++ b/spam/tests/demo_spam.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/demo_spam.Rout.save b/spam/tests/demo_spam.Rout.save index ae97518a554e1daf31108293e8163559ff2e9986..a0399c4a765fe7276bc920a37ca92dbb1d13c2d2 100644 --- a/spam/tests/demo_spam.Rout.save +++ b/spam/tests/demo_spam.Rout.save @@ -1,6 +1,6 @@ -R Under development (unstable) (2018-12-19 r75867) -- "Unsuffered Consequences" -Copyright (C) 2018 The R Foundation for Statistical Computing +R Under development (unstable) (2019-03-06 r76206) -- "Unsuffered Consequences" +Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -21,8 +21,8 @@ Type 'q()' to quit R. > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # -> # by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -> # Roman Flury [ctb], Daniel Gerber [ctb], # +> # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +> # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > @@ -31,7 +31,7 @@ Type 'q()' to quit R. > options( echo=FALSE) Loading required package: dotCall64 Loading required package: grid -Spam version 2.2-1 (2018-12-20) is loaded. +Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the @@ -50,4 +50,4 @@ Class 'spam' (32-bit) > > proc.time() user system elapsed - 1.092 0.084 1.383 + 0.880 0.084 1.050 diff --git a/spam/tests/demo_timing.R b/spam/tests/demo_timing.R index 3354fd5a4debb9b478942881e8691aad8b998be9..ee0bcbbb1f92f16fb15db2b2d81677e01675ac8b 100644 --- a/spam/tests/demo_timing.R +++ b/spam/tests/demo_timing.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/demo_timing.Rout.save b/spam/tests/demo_timing.Rout.save index 92f3fb403e07f8690c44bccbc32f965de81279d0..c1c3b1f7777f76fdbc4e3c185a22d33099a8be30 100644 --- a/spam/tests/demo_timing.Rout.save +++ b/spam/tests/demo_timing.Rout.save @@ -1,6 +1,6 @@ -R Under development (unstable) (2018-12-19 r75867) -- "Unsuffered Consequences" -Copyright (C) 2018 The R Foundation for Statistical Computing +R Under development (unstable) (2019-03-06 r76206) -- "Unsuffered Consequences" +Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -21,8 +21,8 @@ Type 'q()' to quit R. > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # -> # by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -> # Roman Flury [ctb], Daniel Gerber [ctb], # +> # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +> # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > @@ -35,7 +35,7 @@ Type 'q()' to quit R. > options( echo=FALSE) Loading required package: dotCall64 Loading required package: grid -Spam version 2.2-1 (2018-12-20) is loaded. +Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the @@ -79,4 +79,4 @@ Class 'spam' > > proc.time() user system elapsed - 2.656 0.108 3.203 + 2.072 0.072 2.225 diff --git a/spam/tests/jss_areal_counts.R b/spam/tests/jss_areal_counts.R index ffa26b51375b2ac87bb6022a3864436cf836f5b0..cd1c72fb64178d095bc33b3981f0342791113780 100644 --- a/spam/tests/jss_areal_counts.R +++ b/spam/tests/jss_areal_counts.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/jss_areal_counts.Rout.save b/spam/tests/jss_areal_counts.Rout.save index ef1dcbea9364637dcbda3229c58bc206c121b169..bf72236a2548254fda56e81e636f23d67bc2234b 100644 --- a/spam/tests/jss_areal_counts.Rout.save +++ b/spam/tests/jss_areal_counts.Rout.save @@ -1,6 +1,6 @@ -R Under development (unstable) (2018-12-19 r75867) -- "Unsuffered Consequences" -Copyright (C) 2018 The R Foundation for Statistical Computing +R Under development (unstable) (2019-03-06 r76206) -- "Unsuffered Consequences" +Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. @@ -21,8 +21,8 @@ Type 'q()' to quit R. > # --> https://CRAN.R-project.org/package=spam # > # --> https://CRAN.R-project.org/package=spam64 # > # --> https://git.math.uzh.ch/reinhard.furrer/spam # -> # by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -> # Roman Flury [ctb], Daniel Gerber [ctb], # +> # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +> # Roman Flury [aut], Daniel Gerber [ctb], # > # Kaspar Moesinger [ctb] # > # HEADER END ################################################ > @@ -39,7 +39,7 @@ Type 'q()' to quit R. > library("spam") Loading required package: dotCall64 Loading required package: grid -Spam version 2.2-1 (2018-12-20) is loaded. +Spam version 2.2-2 (2019-03-07) is loaded. Type 'help( Spam)' or 'demo( spam)' for a short introduction and overview of this package. Help for individual functions is also obtained by adding the @@ -154,4 +154,4 @@ The following objects are masked from 'package:base': > > proc.time() user system elapsed - 1.656 0.224 2.305 + 1.372 0.172 1.592 diff --git a/spam/tests/testthat.R b/spam/tests/testthat.R index eba4dc8e890e1f3802af1d26ca33b370dd5ec065..5325bfbee9e856cec24e9928ff43bffe3ae2122a 100644 --- a/spam/tests/testthat.R +++ b/spam/tests/testthat.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/helper.R b/spam/tests/testthat/helper.R index eedc7c38ba33aafdcf6f1a33c97cc94788469cf8..359b16cdd8bc1a8651068c141fd76fbd02569df0 100644 --- a/spam/tests/testthat/helper.R +++ b/spam/tests/testthat/helper.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-constructors.R b/spam/tests/testthat/test-constructors.R index b03203f1743820ab4d033902fccf1e225832ed69..df2166008270db9ad5ade299620297e019c4d7e8 100644 --- a/spam/tests/testthat/test-constructors.R +++ b/spam/tests/testthat/test-constructors.R @@ -4,14 +4,15 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ rm(list = ls()) source("helper.R") + # source("tests/testthat/helper.R")##### ## library("testthat") ## library("spam64", lib.loc = LIB.LOC) ## library("spam", lib.loc = "../../../lib/") @@ -23,12 +24,12 @@ options(spam.printsize = 60) set.seed(14) n <- 7 -ln <- 20 +ln <- 50 A <- spam(0,n,n) -is <- sample(n,ln, replace=TRUE) -js <- sample(n,ln, replace=TRUE) +is <- sample(n, ln, replace = TRUE) +js <- sample(n, ln, replace = TRUE) -A[ unique( cbind(is,js)) ] <- 1:8 +A[ unique( cbind(is,js))[1:16,] ] <- 1:8 re <- A@rowpointers @@ -45,18 +46,18 @@ test_that("test for error messages", { r <- re; r[1] <- 0; expect_error(rowpointers(A) <- r, "first element of row pointers is < 1") - r <- re; r[n+1] <- 20; + r <- re; r[n+1] <- 20; expect_error( rowpointers(A) <- r ) r <- c(rep(1,n),n+1); expect_error( rowpointers(A) <- r ) - + ce <- A@colindices colindices(A) <- ce ## TODO expect error or not ?? currrently does not return an error ## r <- ce; r[1:4] <- rev(r[1:4]); - ## expect_error( colindices(A) <- r ) + ## expect_error( colindices(A) <- r ) r <- ce; r[1] <- 0; expect_error( colindices(A) <- r ) r <- ce; r[1] <- 20; @@ -70,3 +71,4 @@ test_that("test for error messages", { expect_error( entries(A) <- r[-1]) expect_error( dimension(A) <- c(1,2)) }) + diff --git a/spam/tests/testthat/test-covmat.R b/spam/tests/testthat/test-covmat.R index c67d5d94ac96dc92c8a5128286538a0d49c6fb73..5f1e77a140530f0160bd6e5bf413da04b16cc8ae 100644 --- a/spam/tests/testthat/test-covmat.R +++ b/spam/tests/testthat/test-covmat.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-crossprod.R b/spam/tests/testthat/test-crossprod.R index ea1bdf0790ff38f874851be0360b6eec7e35df4e..65a69d92b4b427560646565aed8aaadb20e1d494 100644 --- a/spam/tests/testthat/test-crossprod.R +++ b/spam/tests/testthat/test-crossprod.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-diff.R b/spam/tests/testthat/test-diff.R index 65e91bbdf665678d8e024f0a356df5fbb2f0cc1c..1dff596db1c17ed3c37d07d94689f37413166d22 100644 --- a/spam/tests/testthat/test-diff.R +++ b/spam/tests/testthat/test-diff.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-dim.R b/spam/tests/testthat/test-dim.R index 83811a8f3d17872c8fda462504c505d488871d18..676336882f32f84ff30b5fa255a4f349dd3749ec 100644 --- a/spam/tests/testthat/test-dim.R +++ b/spam/tests/testthat/test-dim.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-dist.R b/spam/tests/testthat/test-dist.R index 29c3cb3080a5494531150e1a83dec7713a1c3768..14603cc7e127ed3d265fb3e1827f59b9292d270d 100644 --- a/spam/tests/testthat/test-dist.R +++ b/spam/tests/testthat/test-dist.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-eigen.R b/spam/tests/testthat/test-eigen.R index 3d2e74a791f08e4904af633f6ee8ff474521a87c..14b8dc9d4ac30d9c9d889a514f70b5a108780941 100644 --- a/spam/tests/testthat/test-eigen.R +++ b/spam/tests/testthat/test-eigen.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-helper.R b/spam/tests/testthat/test-helper.R index 622c4cd26a9161919e79057d26baa92cdc44ea13..7dc5a2f112b4ffb4208cc329cb3971038fbce6d4 100644 --- a/spam/tests/testthat/test-helper.R +++ b/spam/tests/testthat/test-helper.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-kronecker.R b/spam/tests/testthat/test-kronecker.R index 10132fd91c62b89f059a8cf6c83e38d4ad66abf9..dc34d4d10be7d5b50f5c9c280c349255f293efd3 100644 --- a/spam/tests/testthat/test-kronecker.R +++ b/spam/tests/testthat/test-kronecker.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-math.R b/spam/tests/testthat/test-math.R index 0fe5dee8312bec1865d97d40d10d139cea0dc866..7ece89bb8d2644acc95726695692e0b7ee2a26e5 100644 --- a/spam/tests/testthat/test-math.R +++ b/spam/tests/testthat/test-math.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-mle.R b/spam/tests/testthat/test-mle.R index 0cfa6e76f872f22a33061b1a724ed40b277b0b3e..1225aff068ac73bea17d717da0aca51a52761310 100644 --- a/spam/tests/testthat/test-mle.R +++ b/spam/tests/testthat/test-mle.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ rm(list = ls()) diff --git a/spam/tests/testthat/test-ops.R b/spam/tests/testthat/test-ops.R index 72923acfe1ec13da36ec25d40ce4e0677477124d..6c45d7186f86708e36f57f20f2f350d4d5f1d890 100644 --- a/spam/tests/testthat/test-ops.R +++ b/spam/tests/testthat/test-ops.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-overall.R b/spam/tests/testthat/test-overall.R index 4e1a4475cdd23b297a6bb912b3cab5d1cdbd7bad..9a72d8bc503995fb0bd961e491c5eff430429979 100644 --- a/spam/tests/testthat/test-overall.R +++ b/spam/tests/testthat/test-overall.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-permutation.R b/spam/tests/testthat/test-permutation.R index 4a06414487ded796f424894993593ffc2f08edaf..699ea962dafffaef0e1d729497704d838984212c 100644 --- a/spam/tests/testthat/test-permutation.R +++ b/spam/tests/testthat/test-permutation.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ rm(list = ls()) diff --git a/spam/tests/testthat/test-profile.R b/spam/tests/testthat/test-profile.R index 8054051b036b3c64762f9900483d18b6391885d7..3dde9c2dc3d3b435d744002df3e1aec941228f89 100644 --- a/spam/tests/testthat/test-profile.R +++ b/spam/tests/testthat/test-profile.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-rep_len64.R b/spam/tests/testthat/test-rep_len64.R index 506342e4e500079258b066cc28299d034e2e6033..a165df2538fcccf048ad824d256055aadc4a837d 100644 --- a/spam/tests/testthat/test-rep_len64.R +++ b/spam/tests/testthat/test-rep_len64.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ rm(list = ls()) diff --git a/spam/tests/testthat/test-rowcolstats.R b/spam/tests/testthat/test-rowcolstats.R index 28dc1be953cd6890bffbe4efce7c02445762fb7f..ae97cc3464e57e6d94635fd5eda24f2c403d16d9 100644 --- a/spam/tests/testthat/test-rowcolstats.R +++ b/spam/tests/testthat/test-rowcolstats.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ rm(list = ls()) diff --git a/spam/tests/testthat/test-solve.R b/spam/tests/testthat/test-solve.R index 5fdccaa8f390e1f9e5be765d77d902ddc8c25437..5cf687537d5689b8fd16aca54f496bfea60d4e9c 100644 --- a/spam/tests/testthat/test-solve.R +++ b/spam/tests/testthat/test-solve.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ rm(list = ls()) diff --git a/spam/tests/testthat/test-spamlist.R b/spam/tests/testthat/test-spamlist.R index 9d1a0f4ceddae35aa9436829844529cb6713b2be..234dcd0c37a5ef00b44afa6a1bad81d4e4a1ae35 100644 --- a/spam/tests/testthat/test-spamlist.R +++ b/spam/tests/testthat/test-spamlist.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-subset.R b/spam/tests/testthat/test-subset.R index e29b217c4d47069db214b4ce25a048c8419d0e9f..a0dd633d7e770bdd30d027f0f87b6982a6145946 100644 --- a/spam/tests/testthat/test-subset.R +++ b/spam/tests/testthat/test-subset.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ diff --git a/spam/tests/testthat/test-xybind.R b/spam/tests/testthat/test-xybind.R index 60a049dc1db832a7c1055204e15078ac04928e1a..0cfb8ef2d86efe157d211a9f31b4f594de615243 100644 --- a/spam/tests/testthat/test-xybind.R +++ b/spam/tests/testthat/test-xybind.R @@ -4,8 +4,8 @@ # --> https://CRAN.R-project.org/package=spam # # --> https://CRAN.R-project.org/package=spam64 # # --> https://git.math.uzh.ch/reinhard.furrer/spam # -# by Reinhard Furrer [aut, cre], Florian Gerber [ctb], # -# Roman Flury [ctb], Daniel Gerber [ctb], # +# by Reinhard Furrer [aut, cre], Florian Gerber [aut], # +# Roman Flury [aut], Daniel Gerber [ctb], # # Kaspar Moesinger [ctb] # # HEADER END ################################################ rm(list = ls()) diff --git a/spam64_2.2-1.tar.gz b/spam64_2.2-1.tar.gz deleted file mode 100644 index 35332b7ec9fd9dbdef9c2ca1bad87e7c0c47c226..0000000000000000000000000000000000000000 Binary files a/spam64_2.2-1.tar.gz and /dev/null differ diff --git a/spam64_2.2-2.tar.gz b/spam64_2.2-2.tar.gz new file mode 100644 index 0000000000000000000000000000000000000000..baa32532ba51a9a33adbf5fb3a309ae2f0b21a96 Binary files /dev/null and b/spam64_2.2-2.tar.gz differ diff --git a/spam_2.2-1.tar.gz b/spam_2.2-1.tar.gz deleted file mode 100644 index 958785a20e21016ac084a8c6accc1b08f61c5f84..0000000000000000000000000000000000000000 Binary files a/spam_2.2-1.tar.gz and /dev/null differ diff --git a/spam_2.2-2.tar.gz b/spam_2.2-2.tar.gz new file mode 100644 index 0000000000000000000000000000000000000000..643bf89fae38d2b0eb9ed7a2ff4fc80c552e11b8 Binary files /dev/null and b/spam_2.2-2.tar.gz differ