plot.Rd 1.78 KB
 Gilles Kratzer committed Feb 21, 2019 1 2 3 4 5 6 7 8 % plot.mcmcabn.Rd --- % Author : Gilles Kratzer % Created on : 18.02.2019 % Last modification : %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \name{plot.mcmcabn} \alias{plot.mcmcabn}  Gilles Kratzer committed Feb 28, 2019 9 \title{Function to plot mcmcabn class objects}  Gilles Kratzer committed Feb 21, 2019 10 11 12 13 14 15 16 17 18 19  \usage{ \method{plot}{mcmcabn}(x, max.score = FALSE, \dots) } \arguments{ \item{x}{object of class mcmcabn.} \item{max.score}{logical to plot the cumulative maximum network score.}  Gilles Kratzer committed Feb 28, 2019 20  \item{\dots}{arguments to be passed to methods.}  Gilles Kratzer committed Feb 21, 2019 21 22  }  Gilles Kratzer committed Feb 28, 2019 23 \description{Generic function to plot \code{mcmcabn} objects.  Gilles Kratzer committed Feb 21, 2019 24 25 }  Gilles Kratzer committed Feb 28, 2019 26 \details{The plot function for mcmcabn objects is based on \pkg{ggplot2}, \pkg{ggpubr} and \pkg{cowplot} packages. By default it returns a trace plot with coloured points when MBR and REV methods have been used. It displays histograms on the right of the densities of (MC)^3, MBR and REV MCMC jumps respectively.}  Gilles Kratzer committed Feb 21, 2019 27 28 29 30  \author{Gilles Kratzer} \references{  Gilles Kratzer committed Feb 28, 2019 31 32  Plotting ability:  Gilles Kratzer committed Feb 21, 2019 33 34 35 36 37 38 H. Wickham. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York, 2016. Alboukadel Kassambara (2018). ggpubr: 'ggplot2' Based Publication Ready Plots. R package version 0.2. https://CRAN.R-project.org/package=ggpubr Claus O. Wilke (2019). cowplot: Streamlined Plot Theme and Plot Annotations for 'ggplot2'. R package version 0.9.4. https://CRAN.R-project.org/package=cowplot  Gilles Kratzer committed Feb 28, 2019 39 Data:  Gilles Kratzer committed Feb 21, 2019 40 41 42 Scutari, M. (2010). Learning Bayesian Networks with the bnlearn R Package. Journal of Statistical Software, 35(3), 1 - 22. doi:http://dx.doi.org/10.18637/jss.v035.i03. }  Gilles Kratzer committed Feb 21, 2019 43   Gilles Kratzer committed Feb 21, 2019 44 45 46 47 48 \examples{ ## Example from the asia dataset from Lauritzen and Spiegelhalter (1988) provided by Scutari (2010) data("mcmc_run_asia") #plot the mcmc run  Gilles Kratzer committed Feb 25, 2019 49 plot(mcmc.out.asia)  Gilles Kratzer committed Mar 07, 2019 50 51 52 53  #plot cumulative max score plot(mcmc.out.asia, max.score = TRUE) }